########################################################################
#          filter (only one activate at same script)                   #
########################################################################
#filter: Laplacian of Gaussian (LIFEx>=7.0.0) [ true || false ]
LIFEx.filter.LaplacianOfGaussian.Enable=true
#filter: Laplacian of Gaussian [ 3D || 2D ]
LIFEx.filter.LaplacianOfGaussian.DimensionProcessing=3D
#filter: Laplacian of Gaussian [ Reflect || Periodic || Edge || Zero ]
LIFEx.filter.LaplacianOfGaussian.PaddingMethod=Reflect
#filter: Laplacian of Gaussian [ unit mm ]
LIFEx.filter.LaplacianOfGaussian.Sigma.z=7
LIFEx.filter.LaplacianOfGaussian.Sigma.y=2
LIFEx.filter.LaplacianOfGaussian.Sigma.x=2

#filter: Gaussian (LIFEx>=7.2.0) [ true || false ]
LIFEx.filter.Gaussian.Enable=true
#filter: Gaussian (LIFEx>=7.2.0) [ 3D || 2D ]
LIFEx.filter.Gaussian.DimensionProcessing=3D
#filter: Gaussian (LIFEx>=7.2.0) [ Reflect || Periodic || Edge || Zero ]
LIFEx.filter.Gaussian.PaddingMethod=Reflect
#filter: Gaussian (LIFEx>=7.2.0) [ unit mm ]
LIFEx.filter.Gaussian.Sigma.z=7
LIFEx.filter.Gaussian.Sigma.y=2
LIFEx.filter.Gaussian.Sigma.x=2

#filter: Mean (LIFEx>=7.0.0) [ true || false ]
LIFEx.filter.Mean.Enable=true
#filter: Diameter Kernel Size (vx) [ integer value ]
LIFEx.filter.Mean.DiameterKernelSize=3
#filter: PaddingMethod [ Reflect || Periodic || Edge || Zero ]
LIFEx.filter.Mean.PaddingMethod=Reflect

#filter: Wavelet (LIFEx>=7.0.0) [ true || false ]
LIFEx.filter.Wavelet.Enable=true
#filter: Transform along Z axis(only for 3D) [ true || false ]
LIFEx.filter.Wavelet.ZTransform=true
#filter: Family [ Coiflets || Biorthogonal || Daubechies || Haar || Reverse biorthogonal || Symlets ]
LIFEx.filter.Wavelet.Family=Coiflets
#filter: Order [ integer value ] cf. documentation for values
LIFEx.filter.Wavelet.Order=1
#filter: Level [ constant integer value ] cf. documentation for values
LIFEx.filter.Wavelet.Level=1
#filter: PaddingMethod [ Reflect || Periodic || Edge || Zero ]
LIFEx.filter.Wavelet.PaddingMethod=Reflect

#filter: Laws (LIFEx>=7.0.0) [ true || false ]
LIFEx.filter.Laws.Enable=true
#filter: Kernel Size (vx) [ L3 || L5 || E3 || E5 || S3 || S5 || W5 || R5 ]
LIFEx.filter.Laws.ZKernelSize=L3
LIFEx.filter.Laws.YKernelSize=L3
LIFEx.filter.Laws.XKernelSize=L3
#filter: PaddingMethod [ Reflect || Periodic || Edge || Zero ]
LIFEx.filter.Laws.PaddingMethod=Reflect


##############################################################################################
#                           gobal section of spatial resampling                              #
#  this global section is available only if sessionN.ImgN.NSpatialResampling is not defined  #
##############################################################################################
LIFEx.texture.ZSpatialResampling=2
LIFEx.texture.YSpatialResampling=2
LIFEx.texture.XSpatialResampling=2

########################################################################
#                            texture                                   #
########################################################################
#texture: Common (LIFEx>=5.1.0) 
LIFEx.texture.BinSize=0
LIFEx.texture.NbGrey=64
LIFEx.texture.SessionCsv=/home/chris/loadV/LIFEx_protocolTexture_ControlQualitySet/ScriptDemoMultiSeries/PT.NII_0_Texture_C1_scriptAll.csv

#texture: Absolute (LIFEx>=5.1.0) [ true || false ]
LIFEx.texture.ButtonAbsolute=false
LIFEx.texture.MinBound=0
LIFEx.texture.MaxBound=20

#texture: RelativeMeanSd (LIFEx>=5.1.0) [ true || false ]
LIFEx.texture.ButtonRelativeMeanSd=false 

#texture: RelativeMinMax (LIFEx>=5.1.0) [ true || false ]
LIFEx.texture.ButtonRelativeMinMax=true


#texture: DistanceWithNeighbours (LIFEx>=5.1.0) 
LIFEx.texture.GLCM.DistanceWithNeighbours=1

#texture: dimension calculation (3D is default) (LIFEx>=5.1.0) [ 3D || 2D ]
LIFEx.texture.DimensionProcessing=3D

########################################################################
#                         patients / ROI                               #
########################################################################
LIFEx.texture.Session0.Img0=/home/chris/loadV/LIFEx_protocolTexture_ControlQualitySet/ScriptDemoMultiSeries/PT.nii.gz
# SpatialResampling of Img0 of session0 (0 = no spatial resampling = native spacing voxels)
#LIFEx.texture.Session0.Img0.ZSpatialResampling=0
#LIFEx.texture.Session0.Img0.YSpatialResampling=0
#LIFEx.texture.Session0.Img0.XSpatialResampling=0
LIFEx.texture.Session0.Roi0=/home/chris/loadV/LIFEx_protocolTexture_ControlQualitySet/ScriptDemoMultiSeries/C1.nii.gz

LIFEx.texture.Session1.Img0=/home/chris/loadV/LIFEx_protocolTexture_ControlQualitySet/ScriptDemoMultiSeries/PT.nii.gz
# SpatialResampling of Img0 of session1 (0 = no spatial resampling = native spacing voxels)
#LIFEx.texture.Session1.Img0.ZSpatialResampling=2
#LIFEx.texture.Session1.Img0.YSpatialResampling=2
#LIFEx.texture.Session1.Img0.XSpatialResampling=2
LIFEx.texture.Session1.Roi0=/home/chris/loadV/LIFEx_protocolTexture_ControlQualitySet/ScriptDemoMultiSeries/C1.nii.gz